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Demichelis, Francesca
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H
Demichelis F
,
Magni P
,
Piergiorgi P
,
Rubin MA
,
Bellazzi R
. 2006.
A hierarchical Naïve Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays.
.
BMC Bioinformatics. 7:514.
G
Rubin MA
,
Girelli G
,
Demichelis F
. 2016.
Genomic Correlates to the Newly Proposed Grading Prognostic Groups for Prostate Cancer.
.
Eur Urol. 69(4):557-60.
Berger MF
,
Lawrence MS
,
Demichelis F
,
Drier Y
,
Cibulskis K
,
Sivachenko AY
,
Sboner A
,
Esgueva R
,
Pflueger D
,
Sougnez C
et al.
. 2011.
The genomic complexity of primary human prostate cancer.
.
Nature. 470(7333):214-20.
Hofer MD
,
Kuefer R
,
Maier C
,
Herkommer K
,
Perner S
,
Demichelis F
,
Paiss T
,
Vogel W
,
Rubin MA
,
Hoegel J
. 2009.
Genome-wide linkage analysis of TMPRSS2-ERG fusion in familial prostate cancer.
.
Cancer Res. 69(2):640-6.
F
Sboner A
,
Habegger L
,
Pflueger D
,
Terry S
,
Chen DZ
,
Rozowsky JS
,
Tewari AK
,
Kitabayashi N
,
Moss BJ
,
Chee MS
et al.
. 2010.
FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data.
.
Genome Biol. 11(10):R104.
E
Barbieri CE
,
Baca SC
,
Lawrence MS
,
Demichelis F
,
Blattner M
,
Theurillat J-P
,
White TA
,
Stojanov P
,
Van Allen E
,
Stransky N
et al.
. 2012.
Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer.
.
Nat Genet. 44(6):685-9.
Setlur SR
,
Mertz KD
,
Hoshida Y
,
Demichelis F
,
Lupien M
,
Perner S
,
Sboner A
,
Pawitan Y
,
Andrén O
,
Johnson LA
et al.
. 2008.
Estrogen-dependent signaling in a molecularly distinct subclass of aggressive prostate cancer.
.
J Natl Cancer Inst. 100(11):815-25.
Perner S
,
Svensson MA
,
Hossain RR
,
Day JR
,
Groskopf J
,
Slaughter RC
,
Jarleborn AR
,
Hofer MD
,
Kuefer R
,
Demichelis F
et al.
. 2010.
ERG rearrangement metastasis patterns in locally advanced prostate cancer.
.
Urology. 75(4):762-7.
Rickman DS
,
Chen Y-B
,
Banerjee S
,
Pan Y
,
Yu J
,
Vuong T
,
Perner S
,
Lafargue CJ
,
Mertz KD
,
Setlur SR
et al.
. 2010.
ERG cooperates with androgen receptor in regulating trefoil factor 3 in prostate cancer disease progression.
.
Neoplasia. 12(12):1031-40.
Lin P-C
,
Chiu Y-L
,
Banerjee S
,
Park K
,
Mosquera JMiguel
,
Giannopoulou E
,
Alves P
,
Tewari AK
,
Gerstein MB
,
Beltran H
et al.
. 2013.
Epigenetic repression of miR-31 disrupts androgen receptor homeostasis and contributes to prostate cancer progression.
.
Cancer Res. 73(3):1232-44.
Perner S
,
Wagner PL
,
Demichelis F
,
Mehra R
,
Lafargue CJ
,
Moss BJ
,
Arbogast S
,
Soltermann A
,
Weder W
,
Giordano TJ
et al.
. 2008.
EML4-ALK fusion lung cancer: a rare acquired event.
.
Neoplasia. 10(3):298-302.
D
Beltran H
,
Prandi D
,
Mosquera JMiguel
,
Benelli M
,
Puca L
,
Cyrta J
,
Marotz C
,
Giannopoulou E
,
Chakravarthi BVSK
,
Varambally S
et al.
. 2016.
Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer.
.
Nat Med. 22(3):298-305.
Demichelis F
,
Setlur SR
,
Beroukhim R
,
Perner S
,
Korbel JO
,
Lafargue CJ
,
Pflueger D
,
Pina C
,
Hofer MD
,
Sboner A
et al.
. 2009.
Distinct genomic aberrations associated with ERG rearranged prostate cancer.
.
Genes Chromosomes Cancer. 48(4):366-80.
Pflueger D
,
Terry S
,
Sboner A
,
Habegger L
,
Esgueva R
,
Lin P-C
,
Svensson MA
,
Kitabayashi N
,
Moss BJ
,
MacDonald TY
et al.
. 2011.
Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing.
.
Genome Res. 21(1):56-67.
Bismar TA
,
Demichelis F
,
Riva A
,
Kim R
,
Varambally S
,
He L
,
Kutok J
,
Aster JC
,
Tang J
,
Kuefer R
et al.
. 2006.
Defining aggressive prostate cancer using a 12-gene model.
.
Neoplasia. 8(1):59-68.
C
Faltas BM
,
Prandi D
,
Tagawa ST
,
Molina AM
,
Nanus DM
,
Sternberg C
,
rosenberg jonathan
,
Mosquera JMiguel
,
Robinson B
,
Elemento O
et al.
. 2016.
Clonal evolution of chemotherapy-resistant urothelial carcinoma.
.
Nat Genet. 48(12):1490-1499.
A
Mertz KD
,
Demichelis F
,
Kim R
,
Schraml P
,
Storz M
,
Diener P-A
,
Moch H
,
Rubin MA
. 2007.
Automated immunofluorescence analysis defines microvessel area as a prognostic parameter in clear cell renal cell cancer.
.
Hum Pathol. 38(10):1454-62.
Mertz KD
,
Demichelis F
,
Sboner A
,
Hirsch MS
,
Dal Cin P
,
Struckmann K
,
Storz M
,
Scherrer S
,
Schmid DM
,
Strebel RT
et al.
. 2008.
Association of cytokeratin 7 and 19 expression with genomic stability and favorable prognosis in clear cell renal cell cancer.
.
Int J Cancer. 123(3):569-76.
Park K
,
Tomlins SA
,
Mudaliar KM
,
Chiu Y-L
,
Esgueva R
,
Mehra R
,
Suleman K
,
Varambally S
,
Brenner JC
,
MacDonald T
et al.
. 2010.
Antibody-based detection of ERG rearrangement-positive prostate cancer.
.
Neoplasia. 12(7):590-8.
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